These Whole Wheat Pumpkin Muffins are made with white whole wheat flour and sweetened with allulose, providing a healthier alternative to the classic versions.

These pumpkin muffins, topped with a toasted pecan streusel, perfectly combine spices, pumpkin goodness, and a satisfying crunch. Whether enjoyed as a breakfast or a sweet treat, they will satisfy your cravings and leave you wanting seconds.
How to Make Whole Wheat Pumpkin Muffins
Note: The full instructions are provided in the recipe card below. Preheat the oven to 350 °F (176.67 °C). Spray a jumbo muffin pan with non-stick cooking spray or place paper liners. In a small bowl, combine the white whole wheat flour, melted butter, allulose, chopped pecans, and cinnamon. Set aside.




Sift together the white whole wheat flour, baking soda, and pumpkin pie spice in a medium bowl. Set aside. In the bowl of an electric mixer, beat the oil and sugar at low speed until blended. Add the eggs one at a time, beating well after each addition.
Add the pumpkin and buttermilk and beat until combined, scraping down the sides of the bowl as necessary. Add the white whole wheat flour mixture and mix at low speed until combined. Do not over-mix! Using a muffin scooper, ice cream scoop, or two spoons, transfer the batter to the prepared muffin pan, filling each cup about ¾ full.
Using your fingers, divide the topping evenly over the batter. Bake the Whole Wheat Pumpkin Muffins for 30 minutes or until a cake tester or toothpick comes out clean. Let the Muffins cool in the pan for 10 minutes, then turn them out onto the rack to cool completely.
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Recipe
Easy Whole Wheat Pumpkin Muffins

Equipment
Ingredients
For the Pecan Streusel:
- 33 g (¼ cup) white whole wheat flour or whole wheat flour, sifted
- 2 tablespoons unsalted butter , melted and cooled
- 8 tablespoons allulose sweetener
- 65 g (¾ cup) toasted pecans, chopped
- ½ teaspoon ground cinnamon
For the pumpkin muffins:
- 250 g (2 cups) white whole wheat flour or whole wheat flour, sifted
- ¼ teaspoon kosher salt
- 6 g (1 teaspoon) baking soda
- 4 teaspoons homemade pumpkin pie spice or store-bought
- ¾ cup avocado oil , expeller-pressed sunflower oil, grape oil, or 1-½ sticks (¾ cup) unsalted butter, softened
- 242 g (1-½ cups) allulose sweetener
- 2 large eggs , room temperature
- ¼ cup buttermilk or sour milk
- 1 (15-ounce) can of 100% pure pumpkin (I use Libby's)
Instructions
- Preheat the oven to 350 °F (176.67 °C). Spray a jumbo muffin pan with non-stick cooking spray or place paper liners
- For the topping: Combine the white whole wheat flour, melted butter, allulose, chopped pecans, and cinnamon in a small bowl. Set aside.
- For the muffins: Sift together the white whole wheat flour, baking soda, and pumpkin pie spice in a medium bowl. Set aside. In the bowl of an electric mixer, beat the oil and sugar at low speed until blended. Add the eggs one at a time, beating well after each addition.
- Add the pumpkin and buttermilk and beat until combined, scraping down the sides of the bowl as necessary. Add the white whole wheat flour mixture and mix at low speed until combined. Do not over-mix! Using a muffin scooper, ice cream scoop, or two spoons, transfer the batter to the prepared muffin pan, filling each cup about ¾ full.
- Using your fingers, divide the topping evenly over the batter. Bake the Whole Wheat Pumpkin Muffins for 30 minutes or until a cake tester or toothpick comes out clean. Let the Whole Wheat Pumpkin Muffins cool in the pan for 10 minutes, then turn out onto the rack to cool completely.
Notes
- How to make the Homemade Buttermilk: Add 4 teaspoons of fresh lemon, lime, or white distilled vinegar to a glass measuring cup, and add enough milk to make 1 cup of total liquid; stir to combine and let stand for 5 minutes (the mixture will begin to curdle). Use as needed in a recipe, or cover and refrigerate until needed.
- How to Make Homemade Pumpkin Pie Spice: you can combine 1 teaspoon ground cinnamon, ¼ teaspoon freshly grated nutmeg, ½ teaspoon ground ginger, ¼ teaspoon ground cloves, and ¼ teaspoon ground allspice.
- Use a combination of avocado oil and unsalted butter-for moistness and flavor.
- Don't overdo it when it comes to mixing; mix until just combined.
- Do not overcook them.
Nutrition
Nutrition Disclaimer: The nutritional information provided is an estimate, calculated using standard data sources. Actual values may vary based on ingredient brands, preparation methods, and portion sizes. This information is for general reference only and should not be considered a substitute for professional dietary advice.












