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HOME » Muffins

Whole Wheat Chocolate Muffins

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Say goodbye to flavorless, dry whole wheat muffins! This 100% whole wheat chocolate muffin recipe yields tender, moist, and super delicious chocolate muffins; no one will guess they are 100% whole wheat. Perfect for breakfast or afternoon snacks.

Whole Wheat Chocolate Muffins
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  • How to Make Whole Wheat Chocolate Muffins
  • Pair with
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  • Recipe

How to Make Whole Wheat Chocolate Muffins

Note: The full instructions are provided in the recipe card below.

Position a rack in the center of the oven and preheat to 425 °F. Line a standard 12-cup muffin pan with paper liners. Whisk together the eggs, buttermilk, and vanilla extract in a large measuring cup or bowl.

In another large bowl, whisk together the flour, cocoa powder, brown sugar, baking powder, baking soda, and salt. Rub the mixture through your fingers to break up any lumps of brown sugar.

Add ¾ cup of the chocolate chips, the buttermilk-egg mixture, and the melted butter to the dry ingredients. Using a rubber spatula or wooden spoon, mix until just combined.

The Best Whole Wheat Chocolate Muffins

Fill the muffin cups with batter using an ice cream scoop or two spoons. Distribute the remaining ¼ cup of chocolate chips evenly over the muffin tops, pressing them lightly into the batter.

Place in the oven and bake for 8 minutes, then turn the oven down to 350 °F and bake the whole wheat chocolate muffins for about 12 minutes more, or until a toothpick inserted in the center of a muffin comes out clean.

Homemade Whole Wheat Chocolate Muffins

(Check a few spots as the melted chocolate chips will make the tester look wet) Transfer to a wire rack and let cool for about 5 minutes before removing the muffins from the pan; cool on a rack. Enjoy our Whole Wheat Chocolate Muffins.

Pair with

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  • Ponche Navideño side view close up
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Recipe

Easy Whole Wheat Chocolate Muffins

by Camila Benitez
Whole Wheat Chocolate Muffins
Say goodbye to flavorless, dry whole wheat muffins! This 100% Whole Wheat Chocolate muffins recipe yields tender, moist, and super delicious chocolate muffins, no one will guess they are 100% whole wheat. Perfect for breakfast or afternoon snacks.
  • Español
  • Print Recipe Pin Recipe Add to Collection Go to Collections
    Prep Time 5 minutes mins
    Cook Time 20 minutes mins
    Total Time 25 minutes mins
    Course Breakfast, Dessert
    Cuisine American
    Servings 12
    Calories 374 kcal

    Equipment

    • Measuring cups
    • medium bowl
    • Muffin Pan
    • Paper liners
    • Whisk
    • Rubber spatula
    • Wire rack
    • Liquid Measuring Cups

    Ingredients
      

    • 229 g (1-¾ cups) white whole wheat flour or whole wheat flour, spooned into a measuring cup, leveled off and sifted
    • 54 g (⅔ cup) natural unsweetened cocoa powder
    • 5 g 1 teaspoon baking soda
    • 10 g (2 teaspoons) baking powder
    • 2 large eggs , room temperature
    • ¼ teaspoon Kosher salt
    • 1 cup sour cream , light cream, or plain yogurt
    • 1 tablespoon pure vanilla extract
    • 265 sugar (1-⅓ cups) light brown sugar, packed
    • 170 g (1cup) of semi-sweet chocolate chips
    • ½ cup avocado oil , grape oil, or 1 stick
    • (½ cup) unsalted butter, melted and slightly cooled

    Instructions
     

    • Position a rack in the center of the oven and preheat to 425 °F. Line a standard 12-cup muffin pan with paper liners.
    • In a large measuring cup or bowl, whisk together the eggs, buttermilk, and vanilla extract.
    • In another large bowl, whisk together the flour, cocoa powder, brown sugar, baking powder, baking soda, and salt. Rub the mixture through your fingers to break up any lumps of brown sugar.
    • To the dry ingredients, add ¾ cup of the chocolate chips, the buttermilk-egg mixture, and the melted butter. Using a rubber spatula or wooden spoon, mix until just combined.
    • Using an ice cream scoop or two spoons, fill the muffin cups to the brim with batter. Distribute the remaining ¼ cup of chocolate chips evenly over the muffin tops, pressing them lightly into the batter.
    • Place in the oven and bake for 8 minutes, then turn the oven down to 350 °F and bake for about 12 minutes more, or until a toothpick inserted in the center of a muffin comes out clean (check a few spots as the melted chocolate chips will make the tester look wet).
    • Transfer to a wire rack and let cool for about 5 minutes before removing the muffins from the pan; cool on a rack. Enjoy our Whole Wheat Chocolate Muffins.

    Notes

    How to Store & Re-Heat
    • To store: Let them cool completely, and place them in an airtight container or sealable bag. They can be kept at room temperature for up to 2 days or refrigerated for up to 1 week.
    • To reheat: Microwave a muffin for 10-15 seconds or bake in a preheated oven at 350°F (175°C) for 5-7 minutes until warmed through. Enjoy within a few days for the best flavor and texture.
    How to Freeze
    Scoop the batter into the muffin cups, filling just above three-quarters full. Divide the topping among the muffins, pressing lightly. Freeze until set, about 3 hours. At this point, the muffins can be removed to zippered freezer bags and stored for up to 2 months. When ready to bake, preheat the oven to 325 degrees F. Place the Whole Wheat Chocolate Muffins in a pan and bake until they are lightly golden and a tester inserted in the center comes out clean, 30 to 35 minutes.
    Notes:
    • How to make the Homemade Buttermilk: Add 4 teaspoons of fresh lemon, lime, or white distilled vinegar to a glass measuring cup, and add enough milk to make 1 cup of total liquid; stir to combine and let stand for 5 minutes (the mixture will begin to curdle). Use as needed in a recipe, or cover and refrigerate until needed.
    • Use a combination of avocado oil and unsalted butter-for moistness and flavor.
    • Don't overdo it when it comes to mixing; mix until just combined.
    • Do not overcook them.

    Nutrition

    Nutrition Facts
    Easy Whole Wheat Chocolate Muffins
    Amount per Serving
    Calories
    374
    % Daily Value*
    Fat
     
    20
    g
    31
    %
    Saturated Fat
     
    7
    g
    44
    %
    Trans Fat
     
    0.01
    g
    Polyunsaturated Fat
     
    2
    g
    Monounsaturated Fat
     
    9
    g
    Cholesterol
     
    39
    mg
    13
    %
    Sodium
     
    270
    mg
    12
    %
    Potassium
     
    254
    mg
    7
    %
    Carbohydrates
     
    47
    g
    16
    %
    Fiber
     
    5
    g
    21
    %
    Sugar
     
    28
    g
    31
    %
    Protein
     
    6
    g
    12
    %
    Vitamin A
     
    168
    IU
    3
    %
    Vitamin C
     
    0.2
    mg
    0
    %
    Calcium
     
    94
    mg
    9
    %
    Iron
     
    2
    mg
    11
    %
    * Percent Daily Values are based on a 2000 calorie diet.

    Nutrition Disclaimer: The nutritional information provided is an estimate, calculated using standard data sources. Actual values may vary based on ingredient brands, preparation methods, and portion sizes. This information is for general reference only and should not be considered a substitute for professional dietary advice.

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    Published: Sep 27, 2021 · Last Updated: Mar 22, 2026 by Camila Benitez · This post may contain affiliate links

    About

    Welcome to Camila Made! My name is Camila Benitez. Here, I share our family's favorite recipes, all tried and loved, from holiday feasts and entertaining to everyday family meals and plenty of baked goods! 🍪😜

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