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HOME » Cookies

Chocolate Chip Cookie Cups: 100% Whole Wheat

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Looking for a quick & healthy dessert recipe?  Try these delicious and super easy-make Chocolate Chip Cookie Cups; 100% Whole Wheat.Pair with sugar-free vanilla ice cream for a perfect quick treat.

Chocolate Chip Cookie Cups: 100% Whole Wheat

How to Make Chocolate Chip Cookie Cups

Note: The full instruction is provided in the recipe card below.

Heat oven to 350 ºF. Lightly butter the bottoms of 12 regular-sized muffin cups and set them aside. In a medium-sized bowl, sift together the flour and baking soda. Stir in chocolate chips and set aside.

Whisk the melted butter, salt, and sugar in a medium bowl until blended. Whisk in the egg and vanilla until combined. Add flour mixture and mix until just combined. Divide batter evenly between the muffin cups; each should be about ½ full.

Bake the Whole Wheat Chocolate Chip Cookie Cups for 10-12 minutes until lightly brown and puffy. Cool in the tin for 30 minutes to 1 hour until the cookie cup centers have sunk, creating the 'cup' for ice cream.

Remove Chocolate Chip Cookie Cups from the tin, loosen them with a knife, and continue cooling on a wire rack. Serve with a scoop of ice cream drizzled with chocolate syrup if desired. Enjoy!🍪🥛

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Recipe

Easy Chocolate Chip Cookie Cups

by Camila Benitez
Chocolate Chip Cookie Cups: 100% Whole Wheat
Looking for a quick & healthy dessert recipe?  Try these delicious and super easy-make Healthy Chocolate Chip Cookie Cups; 100% Whole Wheat.Pair with sugar-free vanilla ice cream for a perfect quick treat
  • Español
  • Print Recipe Pin Recipe Add to Collection Go to Collections
    Prep Time 5 minutes mins
    Cook Time 10 minutes mins
    Total Time 15 minutes mins
    Course Dessert
    Cuisine American
    Servings 12 Chocolate Chip Cookie Cups
    Calories 207 kcal

    Equipment

    • Parchment paper
    • Baking  Sheet
    • Stand Mixer
    • medium bowl
    • Whisk
    • Plastic wrap
    • small bowl
    • Cooling rack
    • cookie scoop

    Ingredients
      

    • 135 g (⅔ cup) light brown sugar
    • 1 egg , room temperature
    • 113 g (½ cup) unsalted butter (I used Smart Balance Original, melted and omitted the salt)
    • 1 Tablespoon pure vanilla extract
    • 138 g (1 cup + 1 tablespoon) white whole wheat flour or whole wheat *(Spooned, leveled, and Sifted)
    • ½ teaspoon baking soda
    • ¼ teaspoon kosher salt
    • 104 g (½ cup plus 1 tablespoon) semisweet chocolate chips *(preferably dark)
    • Sugar-free vanilla ice cream & chocolate sauce for serving , if desired!

    Instructions
     

    • For the Chocolate Chip Cookie Cups: Heat oven to 350 ºF. Lightly butter the bottoms of 12 regular-sized muffin cups and set them aside.
    • In a medium-sized bowl, sift together the flour and baking soda. Stir in chocolate chips and set aside.
    • In a medium bowl, whisk the melted butter, salt, and sugar until blended. Whisk in the egg and vanilla until combined. Add flour mixture and mix until just combined.
    • Divide batter evenly between the muffin cups; each should be about ½ full.
    • Bake the Whole Wheat Chocolate Chip Cookie Cups for 10-12 minutes until lightly brown and puffy.
    • Cool in the tin for 30 minutes to 1 hour until the cookie cup centers have sunk, creating the 'cup' for ice cream. Remove cookie cups from the tin, loosen them with a knife, and continue cooling on a wire rack.
    • Serve with a scoop of ice cream drizzled with chocolate syrup, if desired. Enjoy!

    Notes

    How to Store & Re-Heat
    • To store: Let them cool completely, then transfer them to an airtight container. You can store them at room temperature for up to 3 days or in the refrigerator for up to 1 week. If you want to store them for longer, you can freeze them in an airtight container for up to 2 months.
    • To reheat: Preheat your oven to 350°F (175°C). Place the cookie cups on a baking sheet and heat them in the oven for 5-10 minutes or until warm. Alternatively, microwave the cookie cups on a microwave-safe plate for 10-15 seconds or until warm. Be careful not to overheat them, as they can become too soft or melt the chocolate chips.
    Make-Ahead
    Chocolate Chip Cookie Cups dough can be made a day ahead and stored in an airtight container in the refrigerator for up to 3 days.
    How to Freeze
    Chocolate Chip Cookie Cups dough can be frozen for up to 3 months: Drop the cookie dough in heaping tablespoons onto a sheet pan, let them set in the freezer until solid, then place them in a freezer bag and press out as much air as possible. Bake directly from frozen, as directed in the recipe, but add 1 to 2 extra minutes to the baking time.

    Nutrition

    Nutrition Facts
    Easy Chocolate Chip Cookie Cups
    Amount per Serving
    Calories
    207
    % Daily Value*
    Fat
     
    11
    g
    17
    %
    Saturated Fat
     
    7
    g
    44
    %
    Trans Fat
     
    0.3
    g
    Polyunsaturated Fat
     
    0.5
    g
    Monounsaturated Fat
     
    3
    g
    Cholesterol
     
    34
    mg
    11
    %
    Sodium
     
    104
    mg
    5
    %
    Potassium
     
    86
    mg
    2
    %
    Carbohydrates
     
    24
    g
    8
    %
    Fiber
     
    2
    g
    8
    %
    Sugar
     
    14
    g
    16
    %
    Protein
     
    3
    g
    6
    %
    Vitamin A
     
    259
    IU
    5
    %
    Calcium
     
    27
    mg
    3
    %
    Iron
     
    1
    mg
    6
    %
    * Percent Daily Values are based on a 2000 calorie diet.

    Nutrition Disclaimer: The nutritional information provided is an estimate, calculated using standard data sources. Actual values may vary based on ingredient brands, preparation methods, and portion sizes. This information is for general reference only and should not be considered a substitute for professional dietary advice.

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    Published: Dec 1, 2020 · Last Updated: Jun 23, 2025 by Camila Benitez · This post may contain affiliate links

    About

    Welcome to Camila Made! My name is Camila Benitez. Here, I share our family's favorite recipes, all tried and loved, from holiday feasts and entertaining to everyday family meals and plenty of baked goods! 🍪😜

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